PANCHANGE_descriptives
Katie Thompson, Topher Huebel, Molly Davies, Kirstin Purves
19 November, 2020
This is the analysis script to prepare the data to run analyses for the project “Anxiety, depression and trauma symptom change during the COVID-19 pandemic: retrospective versus objective assessment” - Young et al (2020)
Script written by K Purves, K Thompson, C Huebel and M Davies. Email: kirstin.purves@kcl.ac.uk, katie.thompson@kcl.ac.uk, christopher.1.huebel@kcl.ac.uk, molly.davies@kcl.ac.uk
#Set up
Clear global environment
Retrieve the current date to use it for file endings to not overwrite files when one exports files
#Packages Install packages (if they are not available in your version of R)
Load packages
Registered S3 method overwritten by 'pryr':
method from
print.bytes RcppFor best results, restart R session and update pander using devtools:: or remotes::install_github('rapporter/pander')
Attaching package: 'polycor'The following object is masked from 'package:psych':
polyserialcorrplot 0.84 loaded── Attaching packages ─────────────────────────────────────── tidyverse 1.3.0 ──✓ ggplot2 3.3.2 ✓ purrr 0.3.4
✓ tibble 3.0.4 ✓ dplyr 1.0.2
✓ tidyr 1.1.2 ✓ stringr 1.4.0
✓ readr 1.3.1 ✓ forcats 0.5.0── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
x ggplot2::%+%() masks psych::%+%()
x ggplot2::alpha() masks psych::alpha()
x dplyr::filter() masks stats::filter()
x dplyr::lag() masks stats::lag()
x tibble::view() masks summarytools::view()Colour palettes
Define colours for plotting this are the standard coping colours
Choose in this chunk which palette to use 04.07.2020 - Default to 2 colour COPING palette
ggplot theme
Set up ggplot theme for the plots
Data import
Source data file paths
Read in data
[1] 65223 641 [1] "Sample"
[2] "ID"
[3] "startDate.prepandemic"
[4] "Age_uncleaned"
[5] "Gender_unc"
[6] "Sex"
[7] "EduYrs"
[8] "demographics.college_or_university_degree"
[9] "demographics.a_levelsas_levels_or_equivalent"
[10] "demographics.o_levelsgcses_or_equivalent"
[11] "demographics.cses_or_equivalent"
[12] "demographics.nvq_or_hnd_or_hnc_or_equivalent"
[13] "Ethnicity_unc"
[14] "Gender_numeric"
[15] "Sex_numeric"
[16] "demographics.college_or_university_degree_numeric"
[17] "demographics.a_levelsas_levels_or_equivalent_numeric"
[18] "demographics.o_levelsgcses_or_equivalent_numeric"
[19] "demographics.cses_or_equivalent_numeric"
[20] "demographics.nvq_or_hnd_or_hnc_or_equivalent_numeric"
[21] "Ethnicity_numeric"
[22] "Gender"
[23] "Ethnicity"
[24] "Age"
[25] "age_category_numeric"
[26] "age_category"
[27] "highest_education_prepan_numeric"
[28] "highest_education_prepan"
[29] "employment.phd"
[30] "employment.masters_degree_or_equivalent"
[31] "employment.postgraduate_degree_or_equivalent"
[32] "employment.bachelors_degree_or_equivalent"
[33] "employment.a_levelsas_levels_or_equivalent"
[34] "employment.o_levelsgcses_or_equivalent"
[35] "employment.cses_or_equivalent"
[36] "employment.nvq_or_hnd_or_hnc_or_equivalent"
[37] "employment.government_work_key_workers"
[38] "employment.unemployed"
[39] "employment.zerohours_contract"
[40] "employment.stayathome_parent_or_carer"
[41] "employment.retired"
[42] "employment.student_gcse_or_a_level"
[43] "employment.student_university"
[44] "employment.became_unemployed"
[45] "employment.furloughed_or_paid_leave_government_funded"
[46] "employment.furloughed_or_paid_leave_company_funded"
[47] "employment.paid_leave_furloughed"
[48] "employment.fulltime_employed"
[49] "employment.parttime_employed"
[50] "employment.selfemployed"
[51] "employment.contract_or_freelance_work"
[52] "employment.small_business_owner"
[53] "employment.receiving_state_income"
[54] "employment.my_employment_status_has_not_changed"
[55] "employment.reduction_in_hours"
[56] "employment.reduction_in_salary"
[57] "employment.benefits_increased"
[58] "employment.benefits_decreased"
[59] "employment.became_employed"
[60] "employment.increased_hours"
[61] "employment.increased_salary"
[62] "employment.phd_numeric"
[63] "employment.masters_degree_or_equivalent_numeric"
[64] "employment.postgraduate_degree_or_equivalent_numeric"
[65] "employment.bachelors_degree_or_equivalent_numeric"
[66] "employment.a_levelsas_levels_or_equivalent_numeric"
[67] "employment.o_levelsgcses_or_equivalent_numeric"
[68] "employment.cses_or_equivalent_numeric"
[69] "employment.nvq_or_hnd_or_hnc_or_equivalent_numeric"
[70] "employment.government_work_key_workers_numeric"
[71] "employment.unemployed_numeric"
[72] "employment.zerohours_contract_numeric"
[73] "employment.stayathome_parent_or_carer_numeric"
[74] "employment.retired_numeric"
[75] "employment.student_gcse_or_a_level_numeric"
[76] "employment.student_university_numeric"
[77] "employment.became_unemployed_numeric"
[78] "employment.furloughed_or_paid_leave_government_funded_numeric"
[79] "employment.furloughed_or_paid_leave_company_funded_numeric"
[80] "employment.paid_leave_furloughed_numeric"
[81] "employment.fulltime_employed_numeric"
[82] "employment.parttime_employed_numeric"
[83] "employment.selfemployed_numeric"
[84] "employment.contract_or_freelance_work_numeric"
[85] "employment.small_business_owner_numeric"
[86] "employment.receiving_state_income_numeric"
[87] "employment.my_employment_status_has_not_changed_numeric"
[88] "employment.reduction_in_hours_numeric"
[89] "employment.reduction_in_salary_numeric"
[90] "employment.benefits_increased_numeric"
[91] "employment.benefits_decreased_numeric"
[92] "employment.became_employed_numeric"
[93] "employment.increased_hours_numeric"
[94] "employment.increased_salary_numeric"
[95] "highest_education_numeric"
[96] "highest_education"
[97] "employment_prior_covid_numeric"
[98] "employment_prior_covid"
[99] "employment_change_numeric"
[100] "employment_change"
[101] "key_worker_numeric"
[102] "key_worker"
[103] "anxiety_disorders_numeric"
[104] "anxiety_disorders"
[105] "mhd.specific_phobia_e.g._phobia_of_flying_numeric"
[106] "mhd.specific_phobia_e.g._phobia_of_flying"
[107] "mhd.social_anxiety_or_social_phobia_numeric"
[108] "mhd.social_anxiety_or_social_phobia"
[109] "agoraphobia_panic_disorder_numeric"
[110] "agoraphobia_panic_disorder"
[111] "depressive_disorders_numeric"
[112] "depressive_disorders"
[113] "eating_disorders_numeric"
[114] "eating_disorders"
[115] "obsessive_compulsive_disorders_numeric"
[116] "obsessive_compulsive_disorders"
[117] "psychotic_disorders_numeric"
[118] "psychotic_disorders"
[119] "mhd.mania_hypomania_bipolar_or_manicdepression_numeric"
[120] "mhd.mania_hypomania_bipolar_or_manicdepression"
[121] "mhd.posttraumatic_stress_disorder_ptsd_numeric"
[122] "mhd.posttraumatic_stress_disorder_ptsd"
[123] "autism_spectrum_disorder_numeric"
[124] "autism_spectrum_disorder"
[125] "mhd.attention_deficit_hyperactivity_disorder_numeric"
[126] "mhd.attention_deficit_hyperactivity_disorder"
[127] "mhd.personality_disorder_numeric"
[128] "mhd.personality_disorder"
[129] "personality_cluster_a_numeric"
[130] "personality_cluster_a"
[131] "personality_cluster_b_numeric"
[132] "personality_cluster_b"
[133] "personality_cluster_c_numeric"
[134] "personality_cluster_c"
[135] "depression_and_anxiety_numeric"
[136] "depression_and_anxiety"
[137] "restricting_vs_binge_eating_eating_disorders_numeric"
[138] "restricting_vs_binge_eating_eating_disorders"
[139] "bipolar_and_schizophrenia_numeric"
[140] "bipolar_and_schizophrenia"
[141] "control_numeric"
[142] "control"
[143] "disorders_total_count"
[144] "comorbidity_total_count_numeric"
[145] "comorbidity_total_count_factor_numeric"
[146] "comorbidity_total_count_factor"
[147] "mhd.none_of_the_above"
[148] "mhd.none_of_the_above.1"
[149] "gad.feeling_nervous_anxious_or_on_edge_prepan"
[150] "gad.control_worrying_stop_prepan"
[151] "gad.worrying_too_much_about_different_things_prepan"
[152] "gad.trouble_relaxing_prepan"
[153] "gad.sit_restless_hard_prepan"
[154] "gad.becoming_easily_annoyed_or_irritable_prepan"
[155] "gad.awful_feeling_afraid_happen_prepan"
[156] "gad.feeling_nervous_anxious_or_on_edge_prepan_numeric"
[157] "gad.control_worrying_stop_prepan_numeric"
[158] "gad.worrying_too_much_about_different_things_prepan_numeric"
[159] "gad.trouble_relaxing_prepan_numeric"
[160] "gad.sit_restless_hard_prepan_numeric"
[161] "gad.becoming_easily_annoyed_or_irritable_prepan_numeric"
[162] "gad.awful_feeling_afraid_happen_prepan_numeric"
[163] "gad.sum_score_prepan_raw"
[164] "na_per_person_gad_prepan"
[165] "gad.sum_score_prepan"
[166] "pcl.stressful_experience_repeated_images_prepan"
[167] "pcl.stressful_experience_upset_reminded_prepan"
[168] "pcl.stressful_situation_avoiding_activities_prepan"
[169] "pcl.cut_people_feeling_distant_prepan"
[170] "pcl.feeling_irritable_or_having_angry_outbursts_prepan"
[171] "pcl.difficulty_concentrating_prepan"
[172] "pcl.stressful_experience_repeated_images_prepan_numeric"
[173] "pcl.stressful_experience_upset_reminded_prepan_numeric"
[174] "pcl.stressful_situation_avoiding_activities_prepan_numeric"
[175] "pcl.cut_people_feeling_distant_prepan_numeric"
[176] "pcl.feeling_irritable_or_having_angry_outbursts_prepan_numeric"
[177] "pcl.difficulty_concentrating_prepan_numeric"
[178] "pcl.sum_score_prepan_raw"
[179] "na_per_person_pcl_prepan"
[180] "pcl.sum_score_prepan"
[181] "phq.little_interest_or_pleasure_in_doing_things_prepan"
[182] "phq.feeling_down_depressed_or_hopeless_prepan"
[183] "phq.staying_asleep_sleeping_trouble_prepan"
[184] "phq.feeling_tired_or_having_little_energy_prepan"
[185] "phq.poor_appetite_or_overeating_prepan"
[186] "phq.feeling_bad_failure_family_prepan"
[187] "phq.trouble_concentrating_reading_newspaper_prepan"
[188] "phq.moving_fidgety_noticed_opposite_prepan"
[189] "phq.dead_hurting_thoughts_prepan"
[190] "phq.little_interest_or_pleasure_in_doing_things_prepan_numeric"
[191] "phq.feeling_down_depressed_or_hopeless_prepan_numeric"
[192] "phq.staying_asleep_sleeping_trouble_prepan_numeric"
[193] "phq.feeling_tired_or_having_little_energy_prepan_numeric"
[194] "phq.poor_appetite_or_overeating_prepan_numeric"
[195] "phq.feeling_bad_failure_family_prepan_numeric"
[196] "phq.trouble_concentrating_reading_newspaper_prepan_numeric"
[197] "phq.moving_fidgety_noticed_opposite_prepan_numeric"
[198] "phq.dead_hurting_thoughts_prepan_numeric"
[199] "phq.sum_score_prepan_raw"
[200] "na_per_person_phq_prepan"
[201] "phq.missing_only_suicide_item_prepan"
[202] "phq.sum_score_prepan"
[203] "phq.sum_score_8items_prepan"
[204] "ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan"
[205] "ocir.arranged_things_change_upset_prepan"
[206] "ocir.repeat_feel_numbers_prepan"
[207] "ocir.clean_simply_wash_feel_prepan"
[208] "ocir.mind_upset_unpleasant_thoughts_prepan"
[209] "ocir.afraid_avoid_throwing_things_prepan"
[210] "ocir.light_switches_water_taps_prepan"
[211] "ocir.arranged_things_prepan"
[212] "ocir.good_feel_bad_numbers_prepan"
[213] "ocir.hands_longer_wash_prepan"
[214] "ocir.saved_things_prepan"
[215] "ocir.frequently_difficulty_rid_nasty_prepan"
[216] "ocir.i_check_things_more_often_than_necessary_prepan"
[217] "ocir.arranged_properly_objects_upset_prepan"
[218] "ocir.feel_compelled_count_things_prepan"
[219] "ocir.strangers_touch_touched_difficult_prepan"
[220] "ocir.control_difficult_find_thoughts_prepan"
[221] "ocir.i_collect_things_i_dont_need_prepan"
[222] "ocir.i_repeatedly_check_doors_windows_drawers_etc_prepan_numeric"
[223] "ocir.arranged_things_change_upset_prepan_numeric"
[224] "ocir.repeat_feel_numbers_prepan_numeric"
[225] "ocir.clean_simply_wash_feel_prepan_numeric"
[226] "ocir.mind_upset_unpleasant_thoughts_prepan_numeric"
[227] "ocir.afraid_avoid_throwing_things_prepan_numeric"
[228] "ocir.light_switches_water_taps_prepan_numeric"
[229] "ocir.arranged_things_prepan_numeric"
[230] "ocir.good_feel_bad_numbers_prepan_numeric"
[231] "ocir.hands_longer_wash_prepan_numeric"
[232] "ocir.saved_things_prepan_numeric"
[233] "ocir.frequently_difficulty_rid_nasty_prepan_numeric"
[234] "ocir.i_check_things_more_often_than_necessary_prepan_numeric"
[235] "ocir.arranged_properly_objects_upset_prepan_numeric"
[236] "ocir.feel_compelled_count_things_prepan_numeric"
[237] "ocir.strangers_touch_touched_difficult_prepan_numeric"
[238] "ocir.control_difficult_find_thoughts_prepan_numeric"
[239] "ocir.i_collect_things_i_dont_need_prepan_numeric"
[240] "ocir.sum_score_prepan_raw"
[241] "na_per_person_ocir_prepan"
[242] "ocir.sum_score_prepan"
[243] "startDate.coping"
[244] "gad.problems_made_difficult_care"
[245] "gad.pandemic_felt_feelings"
[246] "gad.feeling_nervous_anxious_or_on_edge_retro"
[247] "gad.control_worrying_stop_retro"
[248] "gad.worrying_too_much_about_different_things_retro"
[249] "gad.trouble_relaxing_retro"
[250] "gad.sit_restless_hard_retro"
[251] "gad.becoming_easily_annoyed_or_irritable_retro"
[252] "gad.awful_feeling_afraid_happen_retro"
[253] "gad.feeling_nervous_anxious_or_on_edge_base"
[254] "gad.control_worrying_stop_base"
[255] "gad.worrying_too_much_about_different_things_base"
[256] "gad.trouble_relaxing_base"
[257] "gad.sit_restless_hard_base"
[258] "gad.becoming_easily_annoyed_or_irritable_base"
[259] "gad.awful_feeling_afraid_happen_base"
[260] "gad.problems_made_difficult_care_numeric"
[261] "gad.pandemic_felt_feelings_numeric"
[262] "gad.feeling_nervous_anxious_or_on_edge_retro_numeric"
[263] "gad.control_worrying_stop_retro_numeric"
[264] "gad.worrying_too_much_about_different_things_retro_numeric"
[265] "gad.trouble_relaxing_retro_numeric"
[266] "gad.sit_restless_hard_retro_numeric"
[267] "gad.becoming_easily_annoyed_or_irritable_retro_numeric"
[268] "gad.awful_feeling_afraid_happen_retro_numeric"
[269] "gad.feeling_nervous_anxious_or_on_edge_base_numeric"
[270] "gad.control_worrying_stop_base_numeric"
[271] "gad.worrying_too_much_about_different_things_base_numeric"
[272] "gad.trouble_relaxing_base_numeric"
[273] "gad.sit_restless_hard_base_numeric"
[274] "gad.becoming_easily_annoyed_or_irritable_base_numeric"
[275] "gad.awful_feeling_afraid_happen_base_numeric"
[276] "gad.sum_score_retro_raw"
[277] "gad.sum_score_base_raw"
[278] "na_per_person_gad_base"
[279] "na_per_person_gad_retro"
[280] "gad.sum_score_base"
[281] "gad.sum_score_retro"
[282] "pcl.stressful_experience_repeated_images_base"
[283] "pcl.stressful_experience_upset_reminded_base"
[284] "pcl.stressful_situation_avoiding_activities_base"
[285] "pcl.cut_people_feeling_distant_base"
[286] "pcl.feeling_irritable_or_having_angry_outbursts_base"
[287] "pcl.difficulty_concentrating_base"
[288] "pcl.stressful_experience_repeated_images_retro"
[289] "pcl.stressful_experience_upset_reminded_retro"
[290] "pcl.stressful_situation_avoiding_activities_retro"
[291] "pcl.cut_people_feeling_distant_retro"
[292] "pcl.feeling_irritable_or_having_angry_outbursts_retro"
[293] "pcl.difficulty_concentrating_retro"
[294] "pcl.stressful_experience_repeated_images_base_numeric"
[295] "pcl.stressful_experience_upset_reminded_base_numeric"
[296] "pcl.stressful_situation_avoiding_activities_base_numeric"
[297] "pcl.cut_people_feeling_distant_base_numeric"
[298] "pcl.feeling_irritable_or_having_angry_outbursts_base_numeric"
[299] "pcl.difficulty_concentrating_base_numeric"
[300] "pcl.stressful_experience_repeated_images_retro_numeric"
[301] "pcl.stressful_experience_upset_reminded_retro_numeric"
[302] "pcl.stressful_situation_avoiding_activities_retro_numeric"
[303] "pcl.cut_people_feeling_distant_retro_numeric"
[304] "pcl.feeling_irritable_or_having_angry_outbursts_retro_numeric"
[305] "pcl.difficulty_concentrating_retro_numeric"
[306] "pcl.sum_score_retro_raw"
[307] "pcl.sum_score_base_raw"
[308] "na_per_person_pcl_base"
[309] "na_per_person_pcl_retro"
[310] "pcl.sum_score_base"
[311] "pcl.sum_score_retro"
[312] "phq.problems_made_difficult_care"
[313] "phq.pandemic_felt_feelings"
[314] "phq.little_interest_or_pleasure_in_doing_things_retro"
[315] "phq.feeling_down_depressed_or_hopeless_retro"
[316] "phq.staying_asleep_sleeping_trouble_retro"
[317] "phq.feeling_tired_or_having_little_energy_retro"
[318] "phq.poor_appetite_or_overeating_retro"
[319] "phq.feeling_bad_failure_family_retro"
[320] "phq.trouble_concentrating_reading_newspaper_retro"
[321] "phq.moving_fidgety_noticed_opposite_retro"
[322] "phq.dead_hurting_thoughts_retro"
[323] "phq.little_interest_or_pleasure_in_doing_things_base"
[324] "phq.feeling_down_depressed_or_hopeless_base"
[325] "phq.staying_asleep_sleeping_trouble_base"
[326] "phq.feeling_tired_or_having_little_energy_base"
[327] "phq.poor_appetite_or_overeating_base"
[328] "phq.feeling_bad_failure_family_base"
[329] "phq.trouble_concentrating_reading_newspaper_base"
[330] "phq.moving_fidgety_noticed_opposite_base"
[331] "phq.dead_hurting_thoughts_base"
[332] "phq.problems_made_difficult_care_numeric"
[333] "phq.pandemic_felt_feelings_numeric"
[334] "phq.little_interest_or_pleasure_in_doing_things_retro_numeric"
[335] "phq.feeling_down_depressed_or_hopeless_retro_numeric"
[336] "phq.staying_asleep_sleeping_trouble_retro_numeric"
[337] "phq.feeling_tired_or_having_little_energy_retro_numeric"
[338] "phq.poor_appetite_or_overeating_retro_numeric"
[339] "phq.feeling_bad_failure_family_retro_numeric"
[340] "phq.trouble_concentrating_reading_newspaper_retro_numeric"
[341] "phq.moving_fidgety_noticed_opposite_retro_numeric"
[342] "phq.dead_hurting_thoughts_retro_numeric"
[343] "phq.little_interest_or_pleasure_in_doing_things_base_numeric"
[344] "phq.feeling_down_depressed_or_hopeless_base_numeric"
[345] "phq.staying_asleep_sleeping_trouble_base_numeric"
[346] "phq.feeling_tired_or_having_little_energy_base_numeric"
[347] "phq.poor_appetite_or_overeating_base_numeric"
[348] "phq.feeling_bad_failure_family_base_numeric"
[349] "phq.trouble_concentrating_reading_newspaper_base_numeric"
[350] "phq.moving_fidgety_noticed_opposite_base_numeric"
[351] "phq.dead_hurting_thoughts_base_numeric"
[352] "phq.sum_score_retro_raw"
[353] "phq.sum_score_base_raw"
[354] "na_per_person_phq_retro"
[355] "phq.missing_only_suicide_item_retro"
[356] "na_per_person_phq_base"
[357] "phq.missing_only_suicide_item_base"
[358] "phq.sum_score_base"
[359] "phq.sum_score_8items_base"
[360] "phq.sum_score_retro"
[361] "phq.sum_score_8items_retro"
[362] "ocir.felt_pandemic_feelings"
[363] "ocir.i_repeatedly_check_doors_windows_drawers_etc_retro"
[364] "ocir.arranged_things_change_upset_retro"
[365] "ocir.repeat_feel_numbers_retro"
[366] "ocir.clean_simply_wash_feel_retro"
[367] "ocir.mind_upset_unpleasant_thoughts_retro"
[368] "ocir.afraid_avoid_throwing_things_retro"
[369] "ocir.light_switches_water_taps_retro"
[370] "ocir.arranged_things_retro"
[371] "ocir.good_feel_bad_numbers_retro"
[372] "ocir.hands_longer_wash_retro"
[373] "ocir.saved_things_retro"
[374] "ocir.frequently_difficulty_rid_nasty_retro"
[375] "ocir.i_check_things_more_often_than_necessary_retro"
[376] "ocir.arranged_properly_objects_upset_retro"
[377] "ocir.feel_compelled_count_things_retro"
[378] "ocir.strangers_touch_touched_difficult_retro"
[379] "ocir.control_difficult_find_thoughts_retro"
[380] "ocir.i_collect_things_i_dont_need_retro"
[381] "ocir.i_repeatedly_check_doors_windows_drawers_etc_base"
[382] "ocir.arranged_things_change_upset_base"
[383] "ocir.repeat_feel_numbers_base"
[384] "ocir.clean_simply_wash_feel_base"
[385] "ocir.mind_upset_unpleasant_thoughts_base"
[386] "ocir.afraid_avoid_throwing_things_base"
[387] "ocir.light_switches_water_taps_base"
[388] "ocir.arranged_things_base"
[389] "ocir.good_feel_bad_numbers_base"
[390] "ocir.hands_longer_wash_base"
[391] "ocir.saved_things_base"
[392] "ocir.frequently_difficulty_rid_nasty_base"
[393] "ocir.i_check_things_more_often_than_necessary_base"
[394] "ocir.arranged_properly_objects_upset_base"
[395] "ocir.feel_compelled_count_things_base"
[396] "ocir.strangers_touch_touched_difficult_base"
[397] "ocir.control_difficult_find_thoughts_base"
[398] "ocir.i_collect_things_i_dont_need_base"
[399] "ocir.felt_pandemic_feelings_numeric"
[400] "ocir.i_repeatedly_check_doors_windows_drawers_etc_retro_numeric"
[401] "ocir.arranged_things_change_upset_retro_numeric"
[402] "ocir.repeat_feel_numbers_retro_numeric"
[403] "ocir.clean_simply_wash_feel_retro_numeric"
[404] "ocir.mind_upset_unpleasant_thoughts_retro_numeric"
[405] "ocir.afraid_avoid_throwing_things_retro_numeric"
[406] "ocir.light_switches_water_taps_retro_numeric"
[407] "ocir.arranged_things_retro_numeric"
[408] "ocir.good_feel_bad_numbers_retro_numeric"
[409] "ocir.hands_longer_wash_retro_numeric"
[410] "ocir.saved_things_retro_numeric"
[411] "ocir.frequently_difficulty_rid_nasty_retro_numeric"
[412] "ocir.i_check_things_more_often_than_necessary_retro_numeric"
[413] "ocir.arranged_properly_objects_upset_retro_numeric"
[414] "ocir.feel_compelled_count_things_retro_numeric"
[415] "ocir.strangers_touch_touched_difficult_retro_numeric"
[416] "ocir.control_difficult_find_thoughts_retro_numeric"
[417] "ocir.i_collect_things_i_dont_need_retro_numeric"
[418] "ocir.i_repeatedly_check_doors_windows_drawers_etc_base_numeric"
[419] "ocir.arranged_things_change_upset_base_numeric"
[420] "ocir.repeat_feel_numbers_base_numeric"
[421] "ocir.clean_simply_wash_feel_base_numeric"
[422] "ocir.mind_upset_unpleasant_thoughts_base_numeric"
[423] "ocir.afraid_avoid_throwing_things_base_numeric"
[424] "ocir.light_switches_water_taps_base_numeric"
[425] "ocir.arranged_things_base_numeric"
[426] "ocir.good_feel_bad_numbers_base_numeric"
[427] "ocir.hands_longer_wash_base_numeric"
[428] "ocir.saved_things_base_numeric"
[429] "ocir.frequently_difficulty_rid_nasty_base_numeric"
[430] "ocir.i_check_things_more_often_than_necessary_base_numeric"
[431] "ocir.arranged_properly_objects_upset_base_numeric"
[432] "ocir.feel_compelled_count_things_base_numeric"
[433] "ocir.strangers_touch_touched_difficult_base_numeric"
[434] "ocir.control_difficult_find_thoughts_base_numeric"
[435] "ocir.i_collect_things_i_dont_need_base_numeric"
[436] "ocir.sum_score_retro_raw"
[437] "ocir.sum_score_base_raw"
[438] "na_per_person_ocir_retro"
[439] "na_per_person_ocir_base"
[440] "ocir.sum_score_base"
[441] "ocir.sum_score_retro"
[442] "alsfrs.limb_weakness_noticed_past"
[443] "alsfrs.normal"
[444] "alsfrs.slow_or_sloppy_all_words_are_legible"
[445] "alsfrs.not_all_words_are_legible"
[446] "alsfrs.able_to_grip_pen"
[447] "alsfrs.unable_to_grip_pen"
[448] "alsfrs.have_you_noticed_any_difficulty_walking"
[449] "alsfrs.do_you_have_any_difficulty_climbing_stairs"
[450] "alsfrs.limb_weakness_noticed_past_numeric"
[451] "alsfrs.normal_numeric"
[452] "alsfrs.slow_or_sloppy_all_words_are_legible_numeric"
[453] "alsfrs.not_all_words_are_legible_numeric"
[454] "alsfrs.able_to_grip_pen_numeric"
[455] "alsfrs.unable_to_grip_pen_numeric"
[456] "alsfrs.have_you_noticed_any_difficulty_walking_numeric"
[457] "alsfrs.do_you_have_any_difficulty_climbing_stairs_numeric"
[458] "ess.felt_excessively_sleepy_past"
[459] "ess.sitting_and_reading"
[460] "ess.watching_tv"
[461] "ess.sitting_inactive_in_a_public_place"
[462] "ess.break_passenger_car_hour"
[463] "ess.afternoon_rest_circumstances_lying"
[464] "ess.sitting_and_talking_to_someone"
[465] "ess.sitting_quietly_after_a_lunch_without_alcohol"
[466] "ess.car_minutes_stopped_traffic"
[467] "ess.insomnia"
[468] "ess.narcolepsy"
[469] "ess.rem_sleep_behaviour_disorder"
[470] "ess.restless_legs_syndrome"
[471] "ess.sleep_apnea"
[472] "ess.sleep_terrors"
[473] "ess.sleepwalking"
[474] "ess.other"
[475] "ess.none"
[476] "ess.felt_excessively_sleepy_past_numeric"
[477] "ess.sitting_and_reading_numeric"
[478] "ess.watching_tv_numeric"
[479] "ess.sitting_inactive_in_a_public_place_numeric"
[480] "ess.break_passenger_car_hour_numeric"
[481] "ess.afternoon_rest_circumstances_lying_numeric"
[482] "ess.sitting_and_talking_to_someone_numeric"
[483] "ess.sitting_quietly_after_a_lunch_without_alcohol_numeric"
[484] "ess.car_minutes_stopped_traffic_numeric"
[485] "ess.insomnia_numeric"
[486] "ess.narcolepsy_numeric"
[487] "ess.rem_sleep_behaviour_disorder_numeric"
[488] "ess.restless_legs_syndrome_numeric"
[489] "ess.sleep_apnea_numeric"
[490] "ess.sleep_terrors_numeric"
[491] "ess.sleepwalking_numeric"
[492] "ess.other_numeric"
[493] "ess.none_numeric"
[494] "midas.headaches_suffered_past_month"
[495] "midas.days_past_month_miss_work_school"
[496] "midas.days_past_month_work_school_half_productivity"
[497] "midas.days_past_month_miss_housework"
[498] "midas.days_past_month_housework_half_productivity"
[499] "midas.days_past_month_miss_social_activities"
[500] "midas.headaches_suffered_past_month_numeric"
[501] "midas.days_past_month_miss_work_school_numeric"
[502] "midas.days_past_month_work_school_half_productivity_numeric"
[503] "midas.days_past_month_miss_housework_numeric"
[504] "midas.days_past_month_housework_half_productivity_numeric"
[505] "midas.days_past_month_miss_social_activities_numeric"
[506] "nmss.ability_taste_food_smell"
[507] "nmss.severe_taste_smell_loss"
[508] "nmss.ability_taste_food_smell_numeric"
[509] "nmss.severe_taste_smell_loss_numeric"
[510] "nmsw.drink_problems_choking_difficulty"
[511] "nmsw.regularly_night_pass_urine"
[512] "nmsw.sex_difficult_finding"
[513] "nmsw.weak_standing_feeling_light"
[514] "nmsw.acting_moving_sleep_talking"
[515] "nmsw.double_vision"
[516] "nmsw.drink_problems_choking_difficulty_numeric"
[517] "nmsw.regularly_night_pass_urine_numeric"
[518] "nmsw.sex_difficult_finding_numeric"
[519] "nmsw.weak_standing_feeling_light_numeric"
[520] "nmsw.acting_moving_sleep_talking_numeric"
[521] "nmsw.double_vision_numeric"
[522] "tinnitus.ears_noises_minutes_head"
[523] "tinnitus.ears_noises_minutes_head_frequency"
[524] "tinnitus.noises_worry_worst_upset"
[525] "tinnitus.ears_noises_minutes_head_numeric"
[526] "tinnitus.ears_noises_minutes_head_frequency_numeric"
[527] "tinnitus.noises_worry_worst_upset_numeric"
[528] "ID.dup"
[529] "prepandemic_january_31_numeric"
[530] "prepandemic_january_31"
[531] "prepandemic_march_1_numeric"
[532] "prepandemic_march_1"
[533] "prepandemic_march_23_numeric"
[534] "prepandemic_march_23"
[535] "time_diff_coping_lockdown_march_23"
[536] "time_diff_coping_awareness_march_1"
[537] "time_diff_coping_first_case_uk_jan_31"
[538] "time_diff_signup_lockdown_march_23"
[539] "time_diff_signup_awareness_march_1"
[540] "time_diff_signup_first_case_uk_jan_31"
[541] "time_diff_sign_up_coping"
[542] "phq.diff_score_retro_prepan"
[543] "phq.diff_score_base_prepan"
[544] "phq.diff_score_base_retro"
[545] "gad.diff_score_retro_prepan"
[546] "gad.diff_score_base_prepan"
[547] "gad.diff_score_base_retro"
[548] "pcl.diff_score_base_prepan"
[549] "ocir.diff_score_retro_prepan"
[550] "ocir.diff_score_base_prepan"
[551] "ocir.diff_score_base_retro"
[552] "data_group_phq_numeric"
[553] "data_group_phq"
[554] "data_group_gad_numeric"
[555] "data_group_gad"
[556] "data_group_pcl_numeric"
[557] "data_group_pcl"
[558] "data_group_ocir_numeric"
[559] "data_group_ocir"
[560] "respiratory.breath_diarrhoea_fatigue_fever"
[561] "respiratory.worst_ill_feel"
[562] "respiratory.persistent_cough"
[563] "respiratory.skipping_meals_because_you_felt_unwell"
[564] "respiratory.was_your_sense_of_smell_impaired"
[565] "respiratory.was_your_sense_of_taste_impaired"
[566] "respiratory.feeling_tiredfatigued"
[567] "respiratory.throat_swab_coronavirus_nose"
[568] "respiratory.throat_swab_test_nose"
[569] "respiratory.coronavirus_antibody_test"
[570] "respiratory.results_antibody_test"
[571] "respiratory.breath_diarrhoea_fatigue_fever_numeric"
[572] "respiratory.worst_ill_feel_numeric"
[573] "respiratory.persistent_cough_numeric"
[574] "respiratory.skipping_meals_because_you_felt_unwell_numeric"
[575] "respiratory.was_your_sense_of_smell_impaired_numeric"
[576] "respiratory.was_your_sense_of_taste_impaired_numeric"
[577] "respiratory.feeling_tiredfatigued_numeric"
[578] "respiratory.throat_swab_coronavirus_nose_numeric"
[579] "respiratory.throat_swab_test_nose_numeric"
[580] "respiratory.coronavirus_antibody_test_numeric"
[581] "respiratory.results_antibody_test_numeric"
[582] "respiratory.anosmia_binary"
[583] "respiratory.pcough_binary"
[584] "respiratory.fatigue_binary"
[585] "respiratory.skipped_meals_binary"
[586] "Sex_respiratory"
[587] "Age_respiratory"
[588] "covid_symptoms"
[589] "covid_probability"
[590] "covid_odds_ratio"
[591] "covid_odds_ratio_50_numeric"
[592] "covid_odds_ratio_50"
[593] "covid_probable_case_incl_screening_numeric"
[594] "covid_probable_case_incl_screening"
[595] "COPING_ID"
[596] "Birthyear_unc"
[597] "Birthmonth"
[598] "Birthday"
[599] "Birthyear_unc_numeric"
[600] "Birthmonth_numeric"
[601] "Birthday_numeric"
[602] "Birthyear_numeric"
[603] "Birthdate"
[604] "Cohort"
[605] "Ethnicity.unc"
[606] "Cohort_numeric"
[607] "Ethnicity.unc_numeric"
[608] "Ethnicity_full"
[609] "Transgender_uncleaned"
[610] "Transgender_uncleaned_numeric"
[611] "employment.what_is_your_highest_level_of_education"
[612] "employment.what_is_your_highest_level_of_education_numeric"
[613] "respiratory.coronavirus_week_antibody_test"
[614] "respiratory.coronavirus_week_antibody_test_numeric"
[615] "covid_test_positive_double_numeric"
[616] "covid_test_positive_double"
[617] "gad.covid_test_positive_numeric"
[618] "covid_test_positive"
[619] "age_category_collapsed_numeric"
[620] "age_category_collapsed"
[621] "age_category_collapsed_reordered"
[622] "Gender_collapsed_numeric"
[623] "Gender_collapsed"
[624] "Ethnicity_collapsed_numeric"
[625] "Ethnicity_collapsed"
[626] "Disorder_hierarchical_psychosis_numeric"
[627] "Disorder_hierarchical_psychosis"
[628] "Disorder_hierarchical_numeric"
[629] "Disorder_hierarchical"
[630] "gad.change_binary_numeric"
[631] "gad.change_binary"
[632] "phq.change_binary_numeric"
[633] "phq.change_binary"
[634] "ocir.change_binary_numeric"
[635] "ocir.change_binary"
[636] "prepandemic_3_months_numeric"
[637] "prepandemic_3_months"
[638] "prepandemic_6_months_numeric"
[639] "prepandemic_6_months"
[640] "prepandemic_9_months_numeric"
[641] "prepandemic_9_months" Important vectors with collections of columns
Vectors for sum_score
[1] "gad.sum_score_prepan" "pcl.sum_score_prepan"
[3] "phq.sum_score_prepan" "phq.sum_score_8items_prepan"
[5] "ocir.sum_score_prepan" "gad.sum_score_base"
[7] "gad.sum_score_retro" "pcl.sum_score_base"
[9] "pcl.sum_score_retro" "phq.sum_score_base"
[11] "phq.sum_score_8items_base" "phq.sum_score_retro"
[13] "phq.sum_score_8items_retro" "ocir.sum_score_base"
[15] "ocir.sum_score_retro" [1] "phq.sum_score_prepan" "phq.sum_score_base" "phq.sum_score_retro" [1] "gad.sum_score_prepan" "gad.sum_score_base" "gad.sum_score_retro" [1] "ocir.sum_score_prepan" "ocir.sum_score_base" "ocir.sum_score_retro" [1] "pcl.sum_score_prepan" "pcl.sum_score_base" "pcl.sum_score_retro" Vectors for diff_score
[1] "phq.diff_score_retro_prepan" "phq.diff_score_base_prepan"
[3] "phq.diff_score_base_retro" "gad.diff_score_retro_prepan"
[5] "gad.diff_score_base_prepan" "gad.diff_score_base_retro"
[7] "pcl.diff_score_base_prepan" "ocir.diff_score_retro_prepan"
[9] "ocir.diff_score_base_prepan" "ocir.diff_score_base_retro" [1] "phq.diff_score_retro_prepan" "phq.diff_score_base_prepan"
[3] "phq.diff_score_base_retro" [1] "gad.diff_score_retro_prepan" "gad.diff_score_base_prepan"
[3] "gad.diff_score_base_retro" [1] "ocir.diff_score_retro_prepan" "ocir.diff_score_base_prepan"
[3] "ocir.diff_score_base_retro" Exclusions
Exclude GLAD/EDGI individuals that didn’t take part in COPING Exclude individuals with NA for the MHD categories Individuals with NAs for age/gender have already been excluded in pre-processing script, but they get excluded here to be safe and to double check previous programming.
[1] 65223 641[1] 31884 641[1] 33339Data availability per questionnaire GAD, PHQ, PCL, and OCI-R
++MD: These ‘data availability’ chunks caused my R to crash, so I’m hashing them out for now. Others can test if it works for them and unhash as needed, otherwise I think they should be removed.
Data availability GAD
Data availability PHQ
Data availability PCL
Data availability OCI-R
Whole sample
Participants per Sample
Eating Disorders Genetics Initative Genetic Links to Anxiety and Depression National BioResource Rapid Assessment of MP
Frequencies
dat$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
EDGI 65 0.20 0.20 0.20 0.20
GLAD 11722 36.76 36.97 36.76 36.97
NBR 13029 40.86 77.83 40.86 77.83
RAMP 7068 22.17 100.00 22.17 100.00
<NA> 0 0.00 100.00
Total 31884 100.00 100.00 100.00 100.00Psychiatric disorders
Frequencies
dat$disorders_total_count
Type: Numeric
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
0 12386 38.85 38.85 38.85 38.85
1 5527 17.33 56.18 17.33 56.18
2 8340 26.16 82.34 26.16 82.34
3 3337 10.47 92.81 10.47 92.81
4 1393 4.37 97.17 4.37 97.17
5 569 1.78 98.96 1.78 98.96
6 239 0.75 99.71 0.75 99.71
7 64 0.20 99.91 0.20 99.91
8 23 0.07 99.98 0.07 99.98
9 6 0.02 100.00 0.02 100.00
<NA> 0 0.00 100.00
Total 31884 100.00 100.00 100.00 100.00#HR
#SB - Impute no change prepandemic scores
[1] 21 11 16 10 1 4 13 14 11 0 9 16 8 7 14 14 4 5 9 9 21 19 4 7 7
[26] 14 17 18 13 21 [1] NA 2 9 5 NA 21 NA NA 3 NA 3 NA 3 3 13 NA 3 0 NA 5 15 17 NA 2 4
[26] 4 15 7 4 18 [1] No different Much worse A little worse A little worse No different
[6] Much better No different No different A little worse No different
5 Levels: Much worse A little worse No different ... Much better [1] 3 1 2 2 3 5 3 3 2 3 [1] 21 11 16 10 1 4 13 14 11 0 9 16 8 7 14 14 4 5 9 9 21 19 4 7 7
[26] 14 17 18 13 21 [1] 21 2 9 5 1 21 13 14 3 0 3 16 3 3 13 14 3 0 9 5 15 17 4 2 4
[26] 4 15 7 4 18 [1] 22 9 15 11 0 9 23 23 11 1 20 18 15 4 11 15 12 10 17 11 24 27 6 3 3
[26] 8 13 21 8 26 [1] 23 1 7 7 NA 20 18 23 5 NA 3 NA 7 3 11 NA 12 2 NA 6 19 27 NA 1 NA
[26] 3 14 9 5 21 [1] A little worse Much worse A little worse A little worse
[5] No different A little better A little worse A little worse
[9] A little worse No different
5 Levels: Much worse A little worse No different ... Much better [1] 2 1 2 2 3 4 2 2 2 3 [1] 22 9 15 11 0 9 23 23 11 1 20 18 15 4 11 15 12 10 17 11 24 27 6 3 3
[26] 8 13 21 8 26 [1] 23 1 7 7 0 20 18 23 5 1 3 18 7 3 11 15 12 2 17 6 19 27 6 1 3
[26] 3 14 9 5 21#Baseline survey completion (N per month)
[1] "2020-04-30 20:51:40 UTC" "2020-04-30 18:55:12 UTC"
[3] "2020-04-30 19:02:04 UTC" "2020-04-30 18:59:37 UTC"
[5] "2020-05-01 10:02:34 UTC" "2020-04-30 22:16:01 UTC"
[7] "2020-04-30 20:36:37 UTC" "2020-04-30 18:57:33 UTC"
[9] "2020-05-01 08:54:01 UTC" "2020-04-30 21:47:03 UTC"
[11] "2020-04-30 19:10:42 UTC" "2020-04-30 19:29:36 UTC"
[13] "2020-04-30 19:20:42 UTC" "2020-05-01 15:09:23 UTC"
[15] "2020-04-30 18:59:55 UTC" "2020-05-04 16:40:21 UTC"
[17] "2020-05-19 10:34:16 UTC" "2020-04-30 19:11:26 UTC"
[19] "2020-05-01 05:04:57 UTC" "2020-04-30 19:18:30 UTC"Vector
Correlation matrix
Warning in polychor(x, y, ML = ML, std.err = std.err): inadmissible correlation
set to -0.9999
Warning in polychor(x, y, ML = ML, std.err = std.err): inadmissible correlation
set to -0.9999Warning in hetcor.data.frame(as.data.frame(dat[, mhd.items]), use =
"pairwise.complete.obs"): the correlation matrix has been adjusted to make it
positive-definite
Two-Step Estimates
Correlations/Type of Correlation:
depressive_disorders
depressive_disorders 1
anxiety_disorders 0.8438
eating_disorders 0.541
obsessive_compulsive_disorders 0.5429
psychotic_disorders 0.5074
mhd.mania_hypomania_bipolar_or_manicdepression 0.5528
mhd.posttraumatic_stress_disorder_ptsd 0.6016
autism_spectrum_disorder 0.4022
mhd.attention_deficit_hyperactivity_disorder 0.3752
mhd.personality_disorder 0.6441
control -0.8188
anxiety_disorders
depressive_disorders Polychoric
anxiety_disorders 1
eating_disorders 0.4988
obsessive_compulsive_disorders 0.638
psychotic_disorders 0.4571
mhd.mania_hypomania_bipolar_or_manicdepression 0.434
mhd.posttraumatic_stress_disorder_ptsd 0.5921
autism_spectrum_disorder 0.4387
mhd.attention_deficit_hyperactivity_disorder 0.4146
mhd.personality_disorder 0.5841
control -0.8066
eating_disorders
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders 1
obsessive_compulsive_disorders 0.5734
psychotic_disorders 0.3664
mhd.mania_hypomania_bipolar_or_manicdepression 0.3778
mhd.posttraumatic_stress_disorder_ptsd 0.391
autism_spectrum_disorder 0.3061
mhd.attention_deficit_hyperactivity_disorder 0.3366
mhd.personality_disorder 0.5257
control -0.6923
obsessive_compulsive_disorders
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders 1
psychotic_disorders 0.3923
mhd.mania_hypomania_bipolar_or_manicdepression 0.3995
mhd.posttraumatic_stress_disorder_ptsd 0.4531
autism_spectrum_disorder 0.4012
mhd.attention_deficit_hyperactivity_disorder 0.393
mhd.personality_disorder 0.5019
control -0.7356
psychotic_disorders
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders 1
mhd.mania_hypomania_bipolar_or_manicdepression 0.7099
mhd.posttraumatic_stress_disorder_ptsd 0.451
autism_spectrum_disorder 0.2978
mhd.attention_deficit_hyperactivity_disorder 0.3434
mhd.personality_disorder 0.609
control -0.7027
mhd.mania_hypomania_bipolar_or_manicdepression
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression 1
mhd.posttraumatic_stress_disorder_ptsd 0.3617
autism_spectrum_disorder 0.2819
mhd.attention_deficit_hyperactivity_disorder 0.3528
mhd.personality_disorder 0.5878
control -0.6942
mhd.posttraumatic_stress_disorder_ptsd
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression Polychoric
mhd.posttraumatic_stress_disorder_ptsd 1
autism_spectrum_disorder 0.2977
mhd.attention_deficit_hyperactivity_disorder 0.2873
mhd.personality_disorder 0.5137
control -0.6917
autism_spectrum_disorder
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression Polychoric
mhd.posttraumatic_stress_disorder_ptsd Polychoric
autism_spectrum_disorder 1
mhd.attention_deficit_hyperactivity_disorder 0.5708
mhd.personality_disorder 0.372
control -0.6338
mhd.attention_deficit_hyperactivity_disorder
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression Polychoric
mhd.posttraumatic_stress_disorder_ptsd Polychoric
autism_spectrum_disorder Polychoric
mhd.attention_deficit_hyperactivity_disorder 1
mhd.personality_disorder 0.3697
control -0.6369
mhd.personality_disorder
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression Polychoric
mhd.posttraumatic_stress_disorder_ptsd Polychoric
autism_spectrum_disorder Polychoric
mhd.attention_deficit_hyperactivity_disorder Polychoric
mhd.personality_disorder 1
control -0.7724
control
depressive_disorders Polychoric
anxiety_disorders Polychoric
eating_disorders Polychoric
obsessive_compulsive_disorders Polychoric
psychotic_disorders Polychoric
mhd.mania_hypomania_bipolar_or_manicdepression Polychoric
mhd.posttraumatic_stress_disorder_ptsd Polychoric
autism_spectrum_disorder Polychoric
mhd.attention_deficit_hyperactivity_disorder Polychoric
mhd.personality_disorder Polychoric
control 1
Standard Errors/Numbers of Observations:
depressive_disorders
depressive_disorders 31884
anxiety_disorders 0.00397
eating_disorders 0.01231
obsessive_compulsive_disorders 0.0117
psychotic_disorders 0.02145
mhd.mania_hypomania_bipolar_or_manicdepression 0.01593
mhd.posttraumatic_stress_disorder_ptsd 0.01074
autism_spectrum_disorder 0.0207
mhd.attention_deficit_hyperactivity_disorder 0.02626
mhd.personality_disorder 0.01499
control Inf
anxiety_disorders
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 0.01209
obsessive_compulsive_disorders 0.01057
psychotic_disorders 0.0202
mhd.mania_hypomania_bipolar_or_manicdepression 0.01556
mhd.posttraumatic_stress_disorder_ptsd 0.01035
autism_spectrum_disorder 0.01985
mhd.attention_deficit_hyperactivity_disorder 0.02525
mhd.personality_disorder 0.01397
control Inf
eating_disorders
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 0.0131
psychotic_disorders 0.02401
mhd.mania_hypomania_bipolar_or_manicdepression 0.0196
mhd.posttraumatic_stress_disorder_ptsd 0.01554
autism_spectrum_disorder 0.02537
mhd.attention_deficit_hyperactivity_disorder 0.02953
mhd.personality_disorder 0.01583
control 12.43
obsessive_compulsive_disorders
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 0.02268
mhd.mania_hypomania_bipolar_or_manicdepression 0.01856
mhd.posttraumatic_stress_disorder_ptsd 0.01415
autism_spectrum_disorder 0.02237
mhd.attention_deficit_hyperactivity_disorder 0.02703
mhd.personality_disorder 0.01581
control 1.765
psychotic_disorders
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 31884
mhd.mania_hypomania_bipolar_or_manicdepression 0.01643
mhd.posttraumatic_stress_disorder_ptsd 0.02092
autism_spectrum_disorder 0.03539
mhd.attention_deficit_hyperactivity_disorder 0.03937
mhd.personality_disorder 0.01899
control 3.349
mhd.mania_hypomania_bipolar_or_manicdepression
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 31884
mhd.mania_hypomania_bipolar_or_manicdepression 31884
mhd.posttraumatic_stress_disorder_ptsd 0.01876
autism_spectrum_disorder 0.0301
mhd.attention_deficit_hyperactivity_disorder 0.03306
mhd.personality_disorder 0.01659
control 1.998
mhd.posttraumatic_stress_disorder_ptsd
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 31884
mhd.mania_hypomania_bipolar_or_manicdepression 31884
mhd.posttraumatic_stress_disorder_ptsd 31884
autism_spectrum_disorder 0.02409
mhd.attention_deficit_hyperactivity_disorder 0.02932
mhd.personality_disorder 0.01524
control 1.737
autism_spectrum_disorder
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 31884
mhd.mania_hypomania_bipolar_or_manicdepression 31884
mhd.posttraumatic_stress_disorder_ptsd 31884
autism_spectrum_disorder 31884
mhd.attention_deficit_hyperactivity_disorder 0.02851
mhd.personality_disorder 0.02595
control 3.405
mhd.attention_deficit_hyperactivity_disorder
depressive_disorders 31884
anxiety_disorders 31884
eating_disorders 31884
obsessive_compulsive_disorders 31884
psychotic_disorders 31884
mhd.mania_hypomania_bipolar_or_manicdepression 31884
mhd.posttraumatic_stress_disorder_ptsd 31884
autism_spectrum_disorder 31884
mhd.attention_deficit_hyperactivity_disorder 31884
mhd.personality_disorder 0.03093
control 1.723
mhd.personality_disorder control
depressive_disorders 31884 31884
anxiety_disorders 31884 31884
eating_disorders 31884 31884
obsessive_compulsive_disorders 31884 31884
psychotic_disorders 31884 31884
mhd.mania_hypomania_bipolar_or_manicdepression 31884 31884
mhd.posttraumatic_stress_disorder_ptsd 31884 31884
autism_spectrum_disorder 31884 31884
mhd.attention_deficit_hyperactivity_disorder 31884 31884
mhd.personality_disorder 31884 31884
control 1.736 31884Create the correlation matrix plot using the corrplot package 
#Correlations of retro impute and prepan ##Create function to use for all of the corplots
###Whole sample prepan retro correlation
Frequencies
prepan_retro_dat$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
EDGI 65 0.55 0.55 0.55 0.55
GLAD 11722 99.45 100.00 99.45 100.00
<NA> 0 0.00 100.00
Total 11787 100.00 100.00 100.00 100.00
Two-Step Estimates
Correlations/Type of Correlation:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 1 Pearson
gad.sum_score_retro 0.5088 1
phq.sum_score_prepan 0.6904 0.4475
phq.sum_score_retro 0.4451 0.7464
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan Pearson Pearson
gad.sum_score_retro Pearson Pearson
phq.sum_score_prepan 1 Pearson
phq.sum_score_retro 0.5898 1
Standard Errors/Numbers of Observations:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 11763 8447
gad.sum_score_retro 0.008065 8465
phq.sum_score_prepan 0.004832 0.008704
phq.sum_score_retro 0.008568 0.005105
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan 11737 8761
gad.sum_score_retro 8444 7530
phq.sum_score_prepan 11756 8758
phq.sum_score_retro 0.006969 8779
P-values for Tests of Bivariate Normality:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan
gad.sum_score_retro 6.356e-158
phq.sum_score_prepan 6.937e-175 4.192e-103
phq.sum_score_retro 2.829e-165 4.78e-131
phq.sum_score_prepan
gad.sum_score_prepan
gad.sum_score_retro
phq.sum_score_prepan
phq.sum_score_retro 6.359e-135Warning in corCi(x = x, keys = keys, n.iter = n.iter, p = p, overlap = overlap, :
Finding confidence intervals from a correlation matrix, but n is not specified, arbitrarily set to 1000
Frequencies
whole_retro_prepan_scatter$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
EDGI 65 0.55 0.55 0.55 0.55
GLAD 11722 99.45 100.00 99.45 100.00
<NA> 0 0.00 100.00
Total 11787 100.00 100.00 100.00 100.00Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 32 rows containing non-finite values (stat_smooth).Warning: Removed 32 rows containing missing values (geom_point).
Warning: Removed 32 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 37 rows containing non-finite values (stat_smooth).Warning: Removed 37 rows containing missing values (geom_point).
Warning: Removed 37 rows containing missing values (geom_point).
###Little/much worse prepan retro correlation
[1] "gad.sum_score_prepan" "gad.sum_score_retro" "phq.sum_score_prepan"
[4] "phq.sum_score_retro" Frequencies
prepan_retro_dat_worse$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
EDGI 42 0.58 0.58 0.58 0.58
GLAD 7251 99.42 100.00 99.42 100.00
<NA> 0 0.00 100.00
Total 7293 100.00 100.00 100.00 100.00
Two-Step Estimates
Correlations/Type of Correlation:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 1 Pearson
gad.sum_score_retro 0.5416 1
phq.sum_score_prepan 0.69 0.4788
phq.sum_score_retro 0.4587 0.7399
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan Pearson Pearson
gad.sum_score_retro Pearson Pearson
phq.sum_score_prepan 1 Pearson
phq.sum_score_retro 0.5991 1
Standard Errors/Numbers of Observations:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 7277 7265
gad.sum_score_retro 0.008292 7281
phq.sum_score_prepan 0.006148 0.009045
phq.sum_score_retro 0.009793 0.00561
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan 7264 6503
gad.sum_score_retro 7264 6508
phq.sum_score_prepan 7276 6502
phq.sum_score_retro 0.007952 6517
P-values for Tests of Bivariate Normality:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan
gad.sum_score_retro 6.086e-111
phq.sum_score_prepan 1.351e-94 7.876e-82
phq.sum_score_retro 1.097e-99 3.302e-87
phq.sum_score_prepan
gad.sum_score_prepan
gad.sum_score_retro
phq.sum_score_prepan
phq.sum_score_retro 1.43e-89Warning in corCi(x = x, keys = keys, n.iter = n.iter, p = p, overlap = overlap, :
Finding confidence intervals from a correlation matrix, but n is not specified, arbitrarily set to 1000
Frequencies
little_much_worse_retro_prepan$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
EDGI 65 0.55 0.55 0.55 0.55
GLAD 11722 99.45 100.00 99.45 100.00
<NA> 0 0.00 100.00
Total 11787 100.00 100.00 100.00 100.00Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 14 rows containing non-finite values (stat_smooth).Warning: Removed 14 rows containing missing values (geom_point).
Warning: Removed 14 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 14 rows containing non-finite values (stat_smooth).
Warning: Removed 14 rows containing missing values (geom_point).
Warning: Removed 14 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 28 rows containing non-finite values (stat_smooth).Warning: Removed 28 rows containing missing values (geom_point).
Warning: Removed 28 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 11 rows containing non-finite values (stat_smooth).Warning: Removed 11 rows containing missing values (geom_point).
Warning: Removed 11 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 16 rows containing non-finite values (stat_smooth).Warning: Removed 16 rows containing missing values (geom_point).
Warning: Removed 16 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 27 rows containing non-finite values (stat_smooth).Warning: Removed 27 rows containing missing values (geom_point).
Warning: Removed 27 rows containing missing values (geom_point).
###Little/much better prepan retro correlation
[1] "gad.sum_score_prepan" "gad.sum_score_retro" "phq.sum_score_prepan"
[4] "phq.sum_score_retro" Frequencies
prepan_retro_dat_better$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------ --------- -------------- --------- --------------
EDGI 7 0.59 0.59 0.59 0.59
GLAD 1179 99.41 100.00 99.41 100.00
<NA> 0 0.00 100.00
Total 1186 100.00 100.00 100.00 100.00
Two-Step Estimates
Correlations/Type of Correlation:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 1 Pearson
gad.sum_score_retro 0.4843 1
phq.sum_score_prepan 0.6497 0.4105
phq.sum_score_retro 0.3582 0.6968
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan Pearson Pearson
gad.sum_score_retro Pearson Pearson
phq.sum_score_prepan 1 Pearson
phq.sum_score_retro 0.5402 1
Standard Errors/Numbers of Observations:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan 1184 1182
gad.sum_score_retro 0.02228 1184
phq.sum_score_prepan 0.01684 0.02422
phq.sum_score_retro 0.0273 0.01611
phq.sum_score_prepan phq.sum_score_retro
gad.sum_score_prepan 1180 1021
gad.sum_score_retro 1180 1022
phq.sum_score_prepan 1182 1020
phq.sum_score_retro 0.0222 1023
P-values for Tests of Bivariate Normality:
gad.sum_score_prepan gad.sum_score_retro
gad.sum_score_prepan
gad.sum_score_retro 6.824e-10
phq.sum_score_prepan 2.617e-12 4.074e-07
phq.sum_score_retro 7.608e-10 1.671e-07
phq.sum_score_prepan
gad.sum_score_prepan
gad.sum_score_retro
phq.sum_score_prepan
phq.sum_score_retro 6.461e-11Warning in corCi(x = x, keys = keys, n.iter = n.iter, p = p, overlap = overlap, :
Finding confidence intervals from a correlation matrix, but n is not specified, arbitrarily set to 1000
Frequencies
little_much_better_retro_prepan$Sample
Type: Character
Freq % Valid % Valid Cum. % Total % Total Cum.
----------- ------- --------- -------------- --------- --------------
EDGI 65 0.55 0.55 0.55 0.55
GLAD 11722 99.45 100.00 99.45 100.00
<NA> 0 0.00 100.00
Total 11787 100.00 100.00 100.00 100.00Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 3 rows containing non-finite values (stat_smooth).Warning: Removed 3 rows containing missing values (geom_point).
Warning: Removed 3 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 1 rows containing non-finite values (stat_smooth).Warning: Removed 1 rows containing missing values (geom_point).
Warning: Removed 1 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 4 rows containing non-finite values (stat_smooth).Warning: Removed 4 rows containing missing values (geom_point).
Warning: Removed 4 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 4 rows containing non-finite values (stat_smooth).
Warning: Removed 4 rows containing missing values (geom_point).
Warning: Removed 4 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 6 rows containing non-finite values (stat_smooth).Warning: Removed 6 rows containing missing values (geom_point).
Warning: Removed 6 rows containing missing values (geom_point).
Warning: Ignoring unknown parameters: w, h`geom_smooth()` using formula 'y ~ x'Warning: Removed 10 rows containing non-finite values (stat_smooth).Warning: Removed 10 rows containing missing values (geom_point).
Warning: Removed 10 rows containing missing values (geom_point).
Create long data frame
Disorders per Gender
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth
100% bar per diagnosis with percentages of contribution per sample
Disorders per sample
| Disorder_inc | Sample | n | Prop |
|---|---|---|---|
| Anxiety disorders | EDGI | 38 | 0.00 |
| Anxiety disorders | GLAD | 10089 | 0.67 |
| Anxiety disorders | NBR | 1752 | 0.12 |
| Anxiety disorders | RAMP | 3076 | 0.21 |
| Depressive disorders | EDGI | 47 | 0.00 |
| Depressive disorders | GLAD | 10607 | 0.63 |
| Depressive disorders | NBR | 2733 | 0.16 |
| Depressive disorders | RAMP | 3452 | 0.21 |
| Eating disorders | EDGI | 61 | 0.03 |
| Eating disorders | GLAD | 1320 | 0.64 |
| Eating disorders | NBR | 191 | 0.09 |
| Eating disorders | RAMP | 482 | 0.23 |
| OCDs | EDGI | 18 | 0.01 |
| OCDs | GLAD | 1585 | 0.69 |
| OCDs | NBR | 142 | 0.06 |
| OCDs | RAMP | 566 | 0.24 |
| Psychotic disorders | GLAD | 387 | 0.67 |
| Psychotic disorders | NBR | 37 | 0.06 |
| Psychotic disorders | RAMP | 152 | 0.26 |
| Bipolar disorders | EDGI | 3 | 0.00 |
| Bipolar disorders | GLAD | 816 | 0.73 |
| Bipolar disorders | NBR | 72 | 0.06 |
| Bipolar disorders | RAMP | 224 | 0.20 |
| PTSD | EDGI | 6 | 0.00 |
| PTSD | GLAD | 1795 | 0.67 |
| PTSD | NBR | 226 | 0.08 |
| PTSD | RAMP | 647 | 0.24 |
| Autism | EDGI | 6 | 0.01 |
| Autism | GLAD | 362 | 0.60 |
| Autism | NBR | 45 | 0.07 |
| Autism | RAMP | 191 | 0.32 |
| ADHD | EDGI | 2 | 0.01 |
| ADHD | GLAD | 191 | 0.56 |
| ADHD | NBR | 32 | 0.09 |
| ADHD | RAMP | 114 | 0.34 |
| Personality disorders | EDGI | 6 | 0.00 |
| Personality disorders | GLAD | 911 | 0.71 |
| Personality disorders | NBR | 76 | 0.06 |
| Personality disorders | RAMP | 295 | 0.23 |
| Controls | EDGI | 1 | 0.00 |
| Controls | GLAD | 139 | 0.01 |
| Controls | NBR | 9247 | 0.78 |
| Controls | RAMP | 2538 | 0.21 |
Warning: Ignoring unknown parameters: binwidth
Disorder per ethnicity
Warning: Ignoring unknown parameters: binwidth
Age categories
Age bar plot for whole sample (not grouped) Summary dataset for age and display it as a bar plot
| age_category | n | Prop | order |
|---|---|---|---|
| 16-18 | 916 | 0.03 | 1 |
| 19-25 | 2376 | 0.07 | 2 |
| 26-35 | 4737 | 0.15 | 3 |
| 36-45 | 4418 | 0.14 | 4 |
| 46-55 | 6481 | 0.20 | 5 |
| 56-65 | 7437 | 0.23 | 6 |
| 66-70 | 2994 | 0.09 | 7 |
| 71-75 | 1887 | 0.06 | 8 |
| 76-80 | 503 | 0.02 | 9 |
| 81-85 | 98 | 0.00 | 10 |
| 86-90 | 26 | 0.00 | 11 |
| 91-100 | 6 | 0.00 | 12 |
| 100+ | 5 | 0.00 | 13 |
Education
Pie charts
summary dataset with frequencies
| highest_education | n | freq |
|---|---|---|
| GCSE/CSE | 3896 | 0.12 |
| NVQ | 2092 | 0.07 |
| A-levels | 6258 | 0.20 |
| University | 18333 | 0.57 |
pie chart labels
Warning: Ignoring unknown parameters: face
Warning: Ignoring unknown parameters: face
Warning: Ignoring unknown aesthetics: face
pie chart - no labels
Ethnicity_collapsed
Pie charts
| Ethnicity_collapsed | n | freq |
|---|---|---|
| European | 27836 | 0.96 |
| Mixed or multiple ethnic origins | 502 | 0.02 |
| Asian or Asian British | 352 | 0.01 |
| African or African British | 116 | 0.00 |
| Other | 148 | 0.01 |
pie chart with only European label
Warning: Ignoring unknown parameters: face
Pie chart - no labels
Gender collapsed
Pie charts
| Gender_collapsed | n | freq |
|---|---|---|
| Male | 8853 | 0.28 |
| Female | 22686 | 0.71 |
| Non-binary/Self-defined | 345 | 0.01 |
Warning: Ignoring unknown parameters: face
Pie chart - only labelling two largest groups (male and female)
Warning: Ignoring unknown parameters: face
Pie chart - no labels 
Compare the GLAD/EDGI and COPING subcohorts: EDGI, GLAD, NBR, RAMP
+++CH: Diagnosis, ethnicity, gender, age
age_category
Proportion tables
| age_category | Sample | n | Prop |
|---|---|---|---|
| 16-18 | EDGI | 7 | 0.00 |
| 16-18 | GLAD | 330 | 0.01 |
| 16-18 | NBR | 10 | 0.00 |
| 16-18 | RAMP | 569 | 0.02 |
| 19-25 | EDGI | 17 | 0.00 |
| 19-25 | GLAD | 1445 | 0.05 |
| 19-25 | NBR | 298 | 0.01 |
| 19-25 | RAMP | 616 | 0.02 |
| 26-35 | EDGI | 21 | 0.00 |
| 26-35 | GLAD | 2667 | 0.08 |
| 26-35 | NBR | 1162 | 0.04 |
| 26-35 | RAMP | 887 | 0.03 |
| 36-45 | EDGI | 8 | 0.00 |
| 36-45 | GLAD | 2264 | 0.07 |
| 36-45 | NBR | 1443 | 0.05 |
| 36-45 | RAMP | 703 | 0.02 |
| 46-55 | EDGI | 4 | 0.00 |
| 46-55 | GLAD | 2604 | 0.08 |
| 46-55 | NBR | 2645 | 0.08 |
| 46-55 | RAMP | 1228 | 0.04 |
| 56-65 | EDGI | 5 | 0.00 |
| 56-65 | GLAD | 1745 | 0.05 |
| 56-65 | NBR | 3900 | 0.12 |
| 56-65 | RAMP | 1787 | 0.06 |
| 66-70 | EDGI | 3 | 0.00 |
| 66-70 | GLAD | 398 | 0.01 |
| 66-70 | NBR | 1934 | 0.06 |
| 66-70 | RAMP | 659 | 0.02 |
| 71-75 | GLAD | 208 | 0.01 |
| 71-75 | NBR | 1238 | 0.04 |
| 71-75 | RAMP | 441 | 0.01 |
| 76-80 | GLAD | 50 | 0.00 |
| 76-80 | NBR | 325 | 0.01 |
| 76-80 | RAMP | 128 | 0.00 |
| 81-85 | GLAD | 10 | 0.00 |
| 81-85 | NBR | 57 | 0.00 |
| 81-85 | RAMP | 31 | 0.00 |
| 86-90 | GLAD | 1 | 0.00 |
| 86-90 | NBR | 12 | 0.00 |
| 86-90 | RAMP | 13 | 0.00 |
| 91-100 | NBR | 2 | 0.00 |
| 91-100 | RAMP | 4 | 0.00 |
| 100+ | NBR | 3 | 0.00 |
| 100+ | RAMP | 2 | 0.00 |
| Sample | age_category | n | Prop |
|---|---|---|---|
| EDGI | 16-18 | 7 | 0.11 |
| EDGI | 19-25 | 17 | 0.26 |
| EDGI | 26-35 | 21 | 0.32 |
| EDGI | 36-45 | 8 | 0.12 |
| EDGI | 46-55 | 4 | 0.06 |
| EDGI | 56-65 | 5 | 0.08 |
| EDGI | 66-70 | 3 | 0.05 |
| GLAD | 16-18 | 330 | 0.03 |
| GLAD | 19-25 | 1445 | 0.12 |
| GLAD | 26-35 | 2667 | 0.23 |
| GLAD | 36-45 | 2264 | 0.19 |
| GLAD | 46-55 | 2604 | 0.22 |
| GLAD | 56-65 | 1745 | 0.15 |
| GLAD | 66-70 | 398 | 0.03 |
| GLAD | 71-75 | 208 | 0.02 |
| GLAD | 76-80 | 50 | 0.00 |
| GLAD | 81-85 | 10 | 0.00 |
| GLAD | 86-90 | 1 | 0.00 |
| NBR | 16-18 | 10 | 0.00 |
| NBR | 19-25 | 298 | 0.02 |
| NBR | 26-35 | 1162 | 0.09 |
| NBR | 36-45 | 1443 | 0.11 |
| NBR | 46-55 | 2645 | 0.20 |
| NBR | 56-65 | 3900 | 0.30 |
| NBR | 66-70 | 1934 | 0.15 |
| NBR | 71-75 | 1238 | 0.10 |
| NBR | 76-80 | 325 | 0.02 |
| NBR | 81-85 | 57 | 0.00 |
| NBR | 86-90 | 12 | 0.00 |
| NBR | 91-100 | 2 | 0.00 |
| NBR | 100+ | 3 | 0.00 |
| RAMP | 16-18 | 569 | 0.08 |
| RAMP | 19-25 | 616 | 0.09 |
| RAMP | 26-35 | 887 | 0.13 |
| RAMP | 36-45 | 703 | 0.10 |
| RAMP | 46-55 | 1228 | 0.17 |
| RAMP | 56-65 | 1787 | 0.25 |
| RAMP | 66-70 | 659 | 0.09 |
| RAMP | 71-75 | 441 | 0.06 |
| RAMP | 76-80 | 128 | 0.02 |
| RAMP | 81-85 | 31 | 0.00 |
| RAMP | 86-90 | 13 | 0.00 |
| RAMP | 91-100 | 4 | 0.00 |
| RAMP | 100+ | 2 | 0.00 |
Cross tables
| age_category | n_EDGI | n_GLAD | n_NBR | n_RAMP | Prop_EDGI | Prop_GLAD | Prop_NBR | Prop_RAMP |
|---|---|---|---|---|---|---|---|---|
| 16-18 | 7 | 330 | 10 | 569 | 0.11 | 0.03 | 0.00 | 0.08 |
| 19-25 | 17 | 1445 | 298 | 616 | 0.26 | 0.12 | 0.02 | 0.09 |
| 26-35 | 21 | 2667 | 1162 | 887 | 0.32 | 0.23 | 0.09 | 0.13 |
| 36-45 | 8 | 2264 | 1443 | 703 | 0.12 | 0.19 | 0.11 | 0.10 |
| 46-55 | 4 | 2604 | 2645 | 1228 | 0.06 | 0.22 | 0.20 | 0.17 |
| 56-65 | 5 | 1745 | 3900 | 1787 | 0.08 | 0.15 | 0.30 | 0.25 |
| 66-70 | 3 | 398 | 1934 | 659 | 0.05 | 0.03 | 0.15 | 0.09 |
| 71-75 | NA | 208 | 1238 | 441 | NA | 0.02 | 0.10 | 0.06 |
| 76-80 | NA | 50 | 325 | 128 | NA | 0.00 | 0.02 | 0.02 |
| 81-85 | NA | 10 | 57 | 31 | NA | 0.00 | 0.00 | 0.00 |
| 86-90 | NA | 1 | 12 | 13 | NA | 0.00 | 0.00 | 0.00 |
| 91-100 | NA | NA | 2 | 4 | NA | NA | 0.00 | 0.00 |
| 100+ | NA | NA | 3 | 2 | NA | NA | 0.00 | 0.00 |
| age_category | EDGI | GLAD | NBR | RAMP |
|---|---|---|---|---|
| 16-18 | 7 | 330 | 10 | 569 |
| 19-25 | 17 | 1445 | 298 | 616 |
| 26-35 | 21 | 2667 | 1162 | 887 |
| 36-45 | 8 | 2264 | 1443 | 703 |
| 46-55 | 4 | 2604 | 2645 | 1228 |
| 56-65 | 5 | 1745 | 3900 | 1787 |
| 66-70 | 3 | 398 | 1934 | 659 |
| 71-75 | 0 | 208 | 1238 | 441 |
| 76-80 | 0 | 50 | 325 | 128 |
| 81-85 | 0 | 10 | 57 | 31 |
| 86-90 | 0 | 1 | 12 | 13 |
| 91-100 | 0 | 0 | 2 | 4 |
| 100+ | 0 | 0 | 3 | 2 |
Chi square test
Warning in chisq.test(.): Chi-squared approximation may be incorrect| statistic | p.value | parameter | method |
|---|---|---|---|
| 5554.159 | 0 | 36 | Pearson’s Chi-squared test |
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth
Ethnicity_collapsed
Proportion tables
| Ethnicity_collapsed | Sample | n | Prop |
|---|---|---|---|
| European | EDGI | 60 | 0.00 |
| European | GLAD | 11213 | 0.35 |
| European | NBR | 9868 | 0.31 |
| European | RAMP | 6695 | 0.21 |
| Mixed or multiple ethnic origins | EDGI | 3 | 0.00 |
| Mixed or multiple ethnic origins | GLAD | 251 | 0.01 |
| Mixed or multiple ethnic origins | NBR | 118 | 0.00 |
| Mixed or multiple ethnic origins | RAMP | 130 | 0.00 |
| Asian or Asian British | EDGI | 1 | 0.00 |
| Asian or Asian British | GLAD | 89 | 0.00 |
| Asian or Asian British | NBR | 126 | 0.00 |
| Asian or Asian British | RAMP | 136 | 0.00 |
| African or African British | GLAD | 38 | 0.00 |
| African or African British | NBR | 46 | 0.00 |
| African or African British | RAMP | 32 | 0.00 |
| Other | EDGI | 1 | 0.00 |
| Other | GLAD | 104 | 0.00 |
| Other | RAMP | 43 | 0.00 |
| NA | GLAD | 27 | 0.00 |
| NA | NBR | 2871 | 0.09 |
| NA | RAMP | 32 | 0.00 |
| Sample | Ethnicity_collapsed | n | Prop |
|---|---|---|---|
| EDGI | European | 60 | 0.92 |
| EDGI | Mixed or multiple ethnic origins | 3 | 0.05 |
| EDGI | Asian or Asian British | 1 | 0.02 |
| EDGI | Other | 1 | 0.02 |
| GLAD | European | 11213 | 0.96 |
| GLAD | Mixed or multiple ethnic origins | 251 | 0.02 |
| GLAD | Asian or Asian British | 89 | 0.01 |
| GLAD | African or African British | 38 | 0.00 |
| GLAD | Other | 104 | 0.01 |
| GLAD | NA | 27 | 0.00 |
| NBR | European | 9868 | 0.76 |
| NBR | Mixed or multiple ethnic origins | 118 | 0.01 |
| NBR | Asian or Asian British | 126 | 0.01 |
| NBR | African or African British | 46 | 0.00 |
| NBR | NA | 2871 | 0.22 |
| RAMP | European | 6695 | 0.95 |
| RAMP | Mixed or multiple ethnic origins | 130 | 0.02 |
| RAMP | Asian or Asian British | 136 | 0.02 |
| RAMP | African or African British | 32 | 0.00 |
| RAMP | Other | 43 | 0.01 |
| RAMP | NA | 32 | 0.00 |
Cross tables
| Ethnicity_collapsed | n_EDGI | n_GLAD | n_NBR | n_RAMP | Prop_EDGI | Prop_GLAD | Prop_NBR | Prop_RAMP |
|---|---|---|---|---|---|---|---|---|
| European | 60 | 11213 | 9868 | 6695 | 0.92 | 0.96 | 0.76 | 0.95 |
| Mixed or multiple ethnic origins | 3 | 251 | 118 | 130 | 0.05 | 0.02 | 0.01 | 0.02 |
| Asian or Asian British | 1 | 89 | 126 | 136 | 0.02 | 0.01 | 0.01 | 0.02 |
| Other | 1 | 104 | NA | 43 | 0.02 | 0.01 | NA | 0.01 |
| African or African British | NA | 38 | 46 | 32 | NA | 0.00 | 0.00 | 0.00 |
| NA | NA | 27 | 2871 | 32 | NA | 0.00 | 0.22 | 0.00 |
| Ethnicity_collapsed | EDGI | GLAD | NBR | RAMP |
|---|---|---|---|---|
| European | 60 | 11213 | 9868 | 6695 |
| Mixed or multiple ethnic origins | 3 | 251 | 118 | 130 |
| Asian or Asian British | 1 | 89 | 126 | 136 |
| African or African British | 0 | 38 | 46 | 32 |
| Other | 1 | 104 | 0 | 43 |
| NA | 0 | 27 | 2871 | 32 |
Chi square test
Warning in chisq.test(.): Chi-squared approximation may be incorrect| statistic | p.value | parameter | method |
|---|---|---|---|
| 4533.299 | 0 | 15 | Pearson’s Chi-squared test |
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth
Gender_collapsed
Proportion tables
| Gender_collapsed | Sample | n | Prop |
|---|---|---|---|
| Male | EDGI | 1 | 0.00 |
| Male | GLAD | 2031 | 0.06 |
| Male | NBR | 5613 | 0.18 |
| Male | RAMP | 1208 | 0.04 |
| Female | EDGI | 62 | 0.00 |
| Female | GLAD | 9460 | 0.30 |
| Female | NBR | 7379 | 0.23 |
| Female | RAMP | 5785 | 0.18 |
| Non-binary/Self-defined | EDGI | 2 | 0.00 |
| Non-binary/Self-defined | GLAD | 231 | 0.01 |
| Non-binary/Self-defined | NBR | 37 | 0.00 |
| Non-binary/Self-defined | RAMP | 75 | 0.00 |
| Sample | Gender_collapsed | n | Prop |
|---|---|---|---|
| EDGI | Male | 1 | 0.02 |
| EDGI | Female | 62 | 0.95 |
| EDGI | Non-binary/Self-defined | 2 | 0.03 |
| GLAD | Male | 2031 | 0.17 |
| GLAD | Female | 9460 | 0.81 |
| GLAD | Non-binary/Self-defined | 231 | 0.02 |
| NBR | Male | 5613 | 0.43 |
| NBR | Female | 7379 | 0.57 |
| NBR | Non-binary/Self-defined | 37 | 0.00 |
| RAMP | Male | 1208 | 0.17 |
| RAMP | Female | 5785 | 0.82 |
| RAMP | Non-binary/Self-defined | 75 | 0.01 |
Cross tables
| Gender_collapsed | n_EDGI | n_GLAD | n_NBR | n_RAMP | Prop_EDGI | Prop_GLAD | Prop_NBR | Prop_RAMP |
|---|---|---|---|---|---|---|---|---|
| Male | 1 | 2031 | 5613 | 1208 | 0.02 | 0.17 | 0.43 | 0.17 |
| Female | 62 | 9460 | 7379 | 5785 | 0.95 | 0.81 | 0.57 | 0.82 |
| Non-binary/Self-defined | 2 | 231 | 37 | 75 | 0.03 | 0.02 | 0.00 | 0.01 |
| Gender_collapsed | EDGI | GLAD | NBR | RAMP |
|---|---|---|---|---|
| Male | 1 | 2031 | 5613 | 1208 |
| Female | 62 | 9460 | 7379 | 5785 |
| Non-binary/Self-defined | 2 | 231 | 37 | 75 |
Chi square test
Warning in chisq.test(.): Chi-squared approximation may be incorrect| statistic | p.value | parameter | method |
|---|---|---|---|
| 2686.677 | 0 | 6 | Pearson’s Chi-squared test |
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth
highest_education
Proportion tables
| highest_education | Sample | n | Prop |
|---|---|---|---|
| GCSE/CSE | EDGI | 7 | 0.00 |
| GCSE/CSE | GLAD | 1024 | 0.03 |
| GCSE/CSE | NBR | 1861 | 0.06 |
| GCSE/CSE | RAMP | 1004 | 0.03 |
| NVQ | EDGI | 3 | 0.00 |
| NVQ | GLAD | 868 | 0.03 |
| NVQ | NBR | 1221 | 0.04 |
| A-levels | EDGI | 20 | 0.00 |
| A-levels | GLAD | 2571 | 0.08 |
| A-levels | NBR | 2310 | 0.08 |
| A-levels | RAMP | 1357 | 0.04 |
| University | EDGI | 35 | 0.00 |
| University | GLAD | 6854 | 0.22 |
| University | NBR | 6956 | 0.23 |
| University | RAMP | 4488 | 0.15 |
| Sample | highest_education | n | Prop |
|---|---|---|---|
| EDGI | GCSE/CSE | 7 | 0.11 |
| EDGI | NVQ | 3 | 0.05 |
| EDGI | A-levels | 20 | 0.31 |
| EDGI | University | 35 | 0.54 |
| GLAD | GCSE/CSE | 1024 | 0.09 |
| GLAD | NVQ | 868 | 0.08 |
| GLAD | A-levels | 2571 | 0.23 |
| GLAD | University | 6854 | 0.61 |
| NBR | GCSE/CSE | 1861 | 0.15 |
| NBR | NVQ | 1221 | 0.10 |
| NBR | A-levels | 2310 | 0.19 |
| NBR | University | 6956 | 0.56 |
| RAMP | GCSE/CSE | 1004 | 0.15 |
| RAMP | A-levels | 1357 | 0.20 |
| RAMP | University | 4488 | 0.66 |
Cross tables
| highest_education | n_EDGI | n_GLAD | n_NBR | n_RAMP | Prop_EDGI | Prop_GLAD | Prop_NBR | Prop_RAMP |
|---|---|---|---|---|---|---|---|---|
| GCSE/CSE | 7 | 1024 | 1861 | 1004 | 0.11 | 0.09 | 0.15 | 0.15 |
| NVQ | 3 | 868 | 1221 | NA | 0.05 | 0.08 | 0.10 | NA |
| A-levels | 20 | 2571 | 2310 | 1357 | 0.31 | 0.23 | 0.19 | 0.20 |
| University | 35 | 6854 | 6956 | 4488 | 0.54 | 0.61 | 0.56 | 0.66 |
| highest_education | EDGI | GLAD | NBR | RAMP |
|---|---|---|---|---|
| GCSE/CSE | 7 | 1024 | 1861 | 1004 |
| NVQ | 3 | 868 | 1221 | 0 |
| A-levels | 20 | 2571 | 2310 | 1357 |
| University | 35 | 6854 | 6956 | 4488 |
Chi square test
Warning in chisq.test(.): Chi-squared approximation may be incorrect| statistic | p.value | parameter | method |
|---|---|---|---|
| 1035.753 | 0 | 12 | Pearson’s Chi-squared test |
Bar plots
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth
key_worker
Proportion tables
| key_worker | Sample | n | Prop |
|---|---|---|---|
| No key worker | EDGI | 42 | 0.00 |
| No key worker | GLAD | 6707 | 0.21 |
| No key worker | NBR | 8610 | 0.27 |
| No key worker | RAMP | 4806 | 0.15 |
| Key worker | EDGI | 23 | 0.00 |
| Key worker | GLAD | 4978 | 0.16 |
| Key worker | NBR | 4399 | 0.14 |
| Key worker | RAMP | 2223 | 0.07 |
| NA | GLAD | 37 | 0.00 |
| NA | NBR | 20 | 0.00 |
| NA | RAMP | 39 | 0.00 |
| Sample | key_worker | n | Prop |
|---|---|---|---|
| EDGI | No key worker | 42 | 0.65 |
| EDGI | Key worker | 23 | 0.35 |
| GLAD | No key worker | 6707 | 0.57 |
| GLAD | Key worker | 4978 | 0.42 |
| GLAD | NA | 37 | 0.00 |
| NBR | No key worker | 8610 | 0.66 |
| NBR | Key worker | 4399 | 0.34 |
| NBR | NA | 20 | 0.00 |
| RAMP | No key worker | 4806 | 0.68 |
| RAMP | Key worker | 2223 | 0.31 |
| RAMP | NA | 39 | 0.01 |
Cross tables
| key_worker | n_EDGI | n_GLAD | n_NBR | n_RAMP | Prop_EDGI | Prop_GLAD | Prop_NBR | Prop_RAMP |
|---|---|---|---|---|---|---|---|---|
| No key worker | 42 | 6707 | 8610 | 4806 | 0.65 | 0.57 | 0.66 | 0.68 |
| Key worker | 23 | 4978 | 4399 | 2223 | 0.35 | 0.42 | 0.34 | 0.31 |
| NA | NA | 37 | 20 | 39 | NA | 0.00 | 0.00 | 0.01 |
| key_worker | EDGI | GLAD | NBR | RAMP |
|---|---|---|---|---|
| No key worker | 42 | 6707 | 8610 | 4806 |
| Key worker | 23 | 4978 | 4399 | 2223 |
| NA | 0 | 37 | 20 | 39 |
Chi square test
Warning in chisq.test(.): Chi-squared approximation may be incorrect| statistic | p.value | parameter | method |
|---|---|---|---|
| 324.3338 | 0 | 6 | Pearson’s Chi-squared test |
Bar plots
Warning: Ignoring unknown parameters: binwidth
Warning: Ignoring unknown parameters: binwidth